- This is a fairly extensive rework of this port.

- "EMBASSY" applications are third party tools which have been adapted to
  function as part of EMBOSS, but which are not included with the base EMBOSS
  distribution for licensing or other reasons.  This new version of the
  EMBOSS port now contains the three current EMBASSY applications as well,
  and during installation the user is presented with a dialog(1) menu to
  choose which of these should be isntalled.

PR:		22818
Submitted by:	Johann Visagie <johann@egenetics.com> MAINTAINER

1 files changed, 61 insertions, 0 deletions

diff --git a/biology/emboss/scripts/configure.emboss b/biology/emboss/scripts/configure.emboss
new file mode 100644
index 000000000000..a17b495c50b1
--- /dev/null
+++ b/biology/emboss/scripts/configure.emboss
@@ -0,0 +1,61 @@
+#!/bin/sh
+
+if [ -f ${WRKDIRPREFIX}${CURDIR}/Makefile.inc ]; then
+  exit
+fi
+
+if [ "${BATCH}" ]; then
+  set \"MSE\" \"PHYLIP\" \"TOPO\"
+else
+  /usr/bin/dialog --title "EMBOSS: EMBASSY applications" --clear \
+  --checklist "\n\
+These third party applications have been adapted to
+function as part of EMBOSS.\n
+Please select EMBASSY applications to install:" -1 -1 3 \
+MSE	"v${MSE_VERSION} - Phylogeny inference" ON \
+PHYLIP	"v${PHYLIP_VERSION} - Sequence editor" ON \
+TOPO	"v${TOPO_VERSION} - Transmembrane display" ON \
+2> /tmp/checklist.tmp.$$
+
+  retval=$?
+
+  if [ -s /tmp/checklist.tmp.$$ ]; then
+    set `cat /tmp/checklist.tmp.$$`
+  fi
+  ${RM} -f /tmp/checklist.tmp.$$
+
+  case $retval in
+    0)
+      if [ -z "$*" ]; then
+        echo "Nothing selected"
+      fi
+    ;;
+    1)
+      echo "Cancel pressed."
+      exit 1
+    ;;
+  esac
+fi
+
+${MKDIR} ${WRKDIRPREFIX}${CURDIR}
+exec > ${WRKDIRPREFIX}${CURDIR}/Makefile.inc
+
+while [ "$1" ]; do
+  case $1 in
+    \"MSE\")
+      echo "WITH_MSE=	yes"
+    ;;
+    \"PHYLIP\")
+      echo "WITH_PHYLIP=	yes"
+    ;;
+    \"TOPO\")
+      echo "WITH_TOPO=	yes"
+    ;;
+    *)
+      echo "Invalid option(s): $*" > /dev/stderr
+      ${RM} -f ${WRKDIRPREFIX}${CURDIR}/Makefile.inc
+      exit 1
+    ;;
+  esac
+  shift
+done