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| author | Lexi Winter <ivy@FreeBSD.org> | 2025-12-01 03:19:41 +0000 |
|---|---|---|
| committer | Lexi Winter <ivy@FreeBSD.org> | 2025-12-01 03:19:41 +0000 |
| commit | 2e80774d0b20d167bc0a9e2b63dafbfb171c0d22 (patch) | |
| tree | 25f0138e1af8902b92dacc8cce09b267447c17db /biology/vsearch/files/patch-src_sintax.cc | |
| parent | f85f2b2d6e5b7ed869376eb4b180c3a74a5c5da9 (diff) | |
| parent | 1a30da80670973368b399f2b01fe9c04b91a1273 (diff) | |
Merge remote-tracking branch 'freebsd/main' into lf/mainlf/main
Diffstat (limited to 'biology/vsearch/files/patch-src_sintax.cc')
| -rw-r--r-- | biology/vsearch/files/patch-src_sintax.cc | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/biology/vsearch/files/patch-src_sintax.cc b/biology/vsearch/files/patch-src_sintax.cc index c6cd9ec46abb..b5af8da42d6e 100644 --- a/biology/vsearch/files/patch-src_sintax.cc +++ b/biology/vsearch/files/patch-src_sintax.cc @@ -1,7 +1,7 @@ ---- src/sintax.cc.orig 2024-09-26 10:48:55 UTC +--- src/sintax.cc.orig 2025-10-05 12:34:38 UTC +++ src/sintax.cc -@@ -289,9 +289,14 @@ auto sintax_search_topscores(struct searchinfo_s * si) - if (bitmap) +@@ -295,9 +295,14 @@ auto sintax_search_topscores(struct searchinfo_s * sea + if (bitmap != nullptr) { #ifdef __x86_64__ + // Not sure how to enable ssse3 without enabling other @@ -9,10 +9,10 @@ + // This code is only used rarely, so disable ssse3 for now. + // It won't affect performance much on the whole. + // https://github.com/torognes/vsearch/pull/497 - if (ssse3_present) + if (ssse3_present != 0) { -- increment_counters_from_bitmap_ssse3(si->kmers, -+ increment_counters_from_bitmap_sse2(si->kmers, +- increment_counters_from_bitmap_ssse3(searchinfo->kmers, ++ increment_counters_from_bitmap_sse2(searchinfo->kmers, bitmap, indexed_count); } else |